CVS log for Poc/ontology/collaborators_ontology/gramene/traits/trait.obo

CVS log for Poc/ontology/collaborators_ontology/gramene/traits/trait.obo
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Revision 1.60 / (view) - annotate - [select for diffs] , Thu Apr 3 18:08:39 2008 UTC (3 months, 3 weeks ago) by pankaj
Branch: MAIN
CVS Tags: PO_0408, HEAD
Changes since 1.59: +6 -4 lines
Diff to previous 1.59

added suffix 'trait' to some of the potential overlapping GO terms

Revision 1.59 / (view) - annotate - [select for diffs] , Thu Apr 3 16:12:36 2008 UTC (3 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.58: +27 -2 lines
Diff to previous 1.58

added definitions and Xrefs to GO terms

Revision 1.58 / (view) - annotate - [select for diffs] , Tue Apr 1 20:17:58 2008 UTC (3 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.57: +282 -79 lines
Diff to previous 1.57

several modifications

Revision 1.57 / (view) - annotate - [select for diffs] , Thu Mar 27 19:57:57 2008 UTC (3 months, 4 weeks ago) by pankaj
Branch: MAIN
Changes since 1.56: +193 -40 lines
Diff to previous 1.56

added new terms, definitions and modified parentage of several terms.

Revision 1.56 / (view) - annotate - [select for diffs] , Wed Mar 26 20:02:54 2008 UTC (3 months, 4 weeks ago) by pankaj
Branch: MAIN
Changes since 1.55: +8 -8 lines
Diff to previous 1.55

corrected spelling mistakes.

Revision 1.55 / (view) - annotate - [select for diffs] , Wed Mar 26 19:55:17 2008 UTC (3 months, 4 weeks ago) by pankaj
Branch: MAIN
Changes since 1.54: +344 -42 lines
Diff to previous 1.54

added new terms, definitions and modified parentage of several terms.

Revision 1.54 / (view) - annotate - [select for diffs] , Fri Mar 14 20:52:29 2008 UTC (4 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.53: +102 -52 lines
Diff to previous 1.53

added new terms and modified parents of few especially the term names with 'grain' in it. Grain is considered by grass researchers as equivalent to fruit. In grasses it is the caryopsis and has intact fruit wall. In rice and some other cereals this is the dehulled grain / brown rice. For con, sorghum etc. kernel/grain is the same thing. seed is not euivalent of grain/kernel as it does not have fruit wall on it.

Revision 1.53 / (view) - annotate - [select for diffs] , Thu Mar 13 15:45:09 2008 UTC (4 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.52: +135 -50 lines
Diff to previous 1.52

added new terms, definitions and synonyms required by the NSF-TV project. also corrected the term names.

Revision 1.52 / (view) - annotate - [select for diffs] , Wed Feb 20 16:12:02 2008 UTC (5 months ago) by pankaj
Branch: MAIN
Changes since 1.51: +29 -3 lines
Diff to previous 1.51

added three new terms
[Term]
id: TO:0002713
name: cell organelle development trait
def: "Trait(s) associated with phenotypes observed for abnormal development of organelle structure and biogenesis." [GR:pj]
narrow_synonym: "organelle biogenesis trait" []
narrow_synonym: "organelle structure trait" []
is_a: TO:0000017 ! anatomy and morphology related trait
is_a: TO:0000283 ! biological process related trait
is_a: TO:0000357 ! growth and development trait

[Term]
id: TO:0002714
name: plastid development trait
def: "Trait(s) associated with phenotypes observed for abnormal development of plastid structure and its biogenesis." [GR:pj]
narrow_synonym: "plastid biogenesis trait" []
narrow_synonym: "plastid structure trait" []
is_a: TO:0002713 ! cell organelle development trait

[Term]
id: TO:0002715
name: chloroplast development trait
def: "Trait(s) associated with phenotypes observed for abnormal development of chloroplast structure and biogenesis." [GR:pj]
narrow_synonym: "chloroplast biogenesis trait" []
narrow_synonym: "chloroplast structure trait" []
is_a: TO:0002714 ! plastid development trait

Revision 1.51 / (view) - annotate - [select for diffs] , Mon Feb 11 20:03:41 2008 UTC (5 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.50: +8 -2 lines
Diff to previous 1.50

added term for stay green trait 'TO:0002712'

Revision 1.50 / (view) - annotate - [select for diffs] , Tue Feb 5 20:52:03 2008 UTC (5 months, 2 weeks ago) by pankaj
Branch: MAIN
Changes since 1.49: +134 -15 lines
Diff to previous 1.49

added several terms and modified definitions and synonyms

Revision 1.49 / (view) - annotate - [select for diffs] , Tue Nov 13 17:09:51 2007 UTC (8 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.48: +4 -4 lines
Diff to previous 1.48

The term name  inflorescence SPACE less was corrected to inflorescenceless [TO:0002679]

Revision 1.48 / (view) - annotate - [select for diffs] , Thu Nov 8 21:51:01 2007 UTC (8 months, 2 weeks ago) by pankaj
Branch: MAIN
Changes since 1.47: +124 -3 lines
Diff to previous 1.47

added several new terms and definitions

Revision 1.47 / (view) - annotate - [select for diffs] , Fri Oct 12 20:27:53 2007 UTC (9 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.46: +102 -6 lines
Diff to previous 1.46

added new terms and synonyms and definitions

Revision 1.46 / (view) - annotate - [select for diffs] , Wed Aug 22 12:45:51 2007 UTC (11 months ago) by pankaj
Branch: MAIN
Changes since 1.45: +3 -3 lines
Diff to previous 1.45

fixed the spelling of 'rolling' in TO:0002662

Revision 1.45 / (view) - annotate - [select for diffs] , Tue Aug 14 14:30:17 2007 UTC (11 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.44: +19 -2 lines
Diff to previous 1.44

added two new terms
id: TO:0002665
name: root hair length
and
id: TO:0002666
name: seed phosphorus content

Revision 1.44 / (view) - annotate - [select for diffs] , Fri Aug 10 17:32:38 2007 UTC (11 months, 2 weeks ago) by pankaj
Branch: MAIN
Changes since 1.43: +33 -5 lines
Diff to previous 1.43

added terms and definitions

Revision 1.43 / (view) - annotate - [select for diffs] , Thu May 17 19:16:18 2007 UTC (14 months, 1 week ago) by pankaj
Branch: MAIN
CVS Tags: PO_0607
Changes since 1.42: +83 -7 lines
Diff to previous 1.42

added a lot of terms and definitions

Revision 1.42 / (view) - annotate - [select for diffs] , Wed May 16 19:47:44 2007 UTC (14 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.41: +4 -1 lines
Diff to previous 1.41

couple of changes

Revision 1.41 / (view) - annotate - [select for diffs] , Wed May 16 17:51:25 2007 UTC (14 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.40: +56 -12 lines
Diff to previous 1.40

several changes

Revision 1.40 / (view) - annotate - [select for diffs] , Tue May 15 20:00:52 2007 UTC (14 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.39: +201 -68 lines
Diff to previous 1.39

several changes

Revision 1.39 / (view) - annotate - [select for diffs] , Wed May 2 13:59:37 2007 UTC (14 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.38: +5 -3 lines
Diff to previous 1.38

added synonyms for 5008 and typo in term name 'european corn borer resistance' It is now 'European corn borer resistance' E caps case

Revision 1.38 / (view) - annotate - [select for diffs] , Wed May 2 03:33:14 2007 UTC (14 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.37: +10 -3 lines
Diff to previous 1.37

added new term
id: TO:0005011
name: enhanced nutrient utilization efficiency
is_a: TO:0000349 ! physiological process related trait

Revision 1.37 / (view) - annotate - [select for diffs] , Tue May 1 20:27:25 2007 UTC (14 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.36: +44 -21 lines
Diff to previous 1.36

lots of modifications

Revision 1.36 / (view) - annotate - [select for diffs] , Mon Apr 9 18:09:58 2007 UTC (15 months, 2 weeks ago) by pankaj
Branch: MAIN
Changes since 1.35: +48 -5 lines
Diff to previous 1.35

added several terms, added synonyms and modified definitions

Revision 1.35 / (view) - annotate - [select for diffs] , Tue Apr 3 19:13:20 2007 UTC (15 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.34: +2 -1 lines
Diff to previous 1.34

added synonym SDMT to TO:0002661

Revision 1.34 / (view) - annotate - [select for diffs] , Tue Apr 3 17:04:55 2007 UTC (15 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.33: +77 -5 lines
Diff to previous 1.33

added terms
id: TO:0005001;name: linoleic acid content
id: TO:0005002;name: oleic acid content
id: TO:0005003;name: stearic acid content
id: TO:0005004;name: omega-3 fatty acid content
id: TO:0005005;name: alpha-linolenic acid content

Revision 1.33 / (view) - annotate - [select for diffs] , Tue Apr 3 16:03:19 2007 UTC (15 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.32: +3 -2 lines
Diff to previous 1.32

modified the definition text and added a synonym for TO:0002661 seed maturation

Revision 1.32 / (view) - annotate - [select for diffs] , Tue Apr 3 15:59:40 2007 UTC (15 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.31: +10 -2 lines
Diff to previous 1.31

added new term TO:0002661 seed maturation

Revision 1.31 / (view) - annotate - [select for diffs] , Fri Mar 16 20:41:15 2007 UTC (16 months, 1 week ago) by pankaj
Branch: MAIN
Changes since 1.30: +14 -3 lines
Diff to previous 1.30

added two terms TO:0002659, TO:0002660

Revision 1.30 / (view) - annotate - [select for diffs] , Tue Mar 6 20:27:33 2007 UTC (16 months, 2 weeks ago) by pankaj
Branch: MAIN
Changes since 1.29: +18 -2 lines
Diff to previous 1.29

added terms, modified parents and added definitions

Revision 1.29 / (view) - annotate - [select for diffs] , Thu Mar 1 20:25:01 2007 UTC (16 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.28: +15 -3 lines
Diff to previous 1.28

added new terms

Revision 1.28 / (view) - annotate - [select for diffs] , Thu Mar 1 17:08:25 2007 UTC (16 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.27: +41 -20 lines
Diff to previous 1.27

lots of changes

Revision 1.27 / (view) - annotate - [select for diffs] , Wed Feb 28 16:09:14 2007 UTC (16 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.26: +26 -4 lines
Diff to previous 1.26

added new terms

id: TO:0002651 name: shoot phototropism
id: TO:0002652 name: root phototropism
id: TO:0002650 name: phototropism

renamed TO:0000161 radiation sensitivity to  radiation response trait
added definition for TO:0000161 radiation response trait
added definition for id: TO:0000075 name: light sensitivity

Revision 1.26 / (view) - annotate - [select for diffs] , Mon Nov 27 20:10:26 2006 UTC (19 months, 3 weeks ago) by pankaj
Branch: MAIN
CVS Tags: PO_0107
Changes since 1.25: +4 -4 lines
Diff to previous 1.25

no message

Revision 1.25 / (view) - annotate - [select for diffs] , Thu Nov 2 21:08:14 2006 UTC (20 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.24: +1 -0 lines
Diff to previous 1.24

added the version number in header

Revision 1.24 / (view) - annotate - [select for diffs] , Thu Nov 2 17:32:44 2006 UTC (20 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.23: +31 -10 lines
Diff to previous 1.23

modified existing terms, definitions and synonyms
added new terms, synonyms and definitions.

Revision 1.23 / (view) - annotate - [select for diffs] , Wed Oct 25 14:35:33 2006 UTC (20 months, 4 weeks ago) by pankaj
Branch: MAIN
Changes since 1.22: +6 -6 lines
Diff to previous 1.22

the GrainGenes_trait IDs in DBXrefs were fixed for case sensitivity. GrainGenes db wanted it that way.

Revision 1.22 / (view) - annotate - [select for diffs] , Tue Oct 24 19:35:23 2006 UTC (21 months ago) by pankaj
Branch: MAIN
Changes since 1.21: +4 -4 lines
Diff to previous 1.21

added the ' _trait' to graingenes DBXref name

Revision 1.21 / (view) - annotate - [select for diffs] , Tue Oct 24 19:31:58 2006 UTC (21 months ago) by pankaj
Branch: MAIN
Changes since 1.20: +1 -0 lines
Diff to previous 1.20

added synomym ADF for TO:0002641

Revision 1.20 / (view) - annotate - [select for diffs] , Tue Oct 24 19:29:13 2006 UTC (21 months ago) by pankaj
Branch: MAIN
Changes since 1.19: +1 -1 lines
Diff to previous 1.19

added GrainGenes DBXref

Revision 1.19 / (view) - annotate - [select for diffs] , Tue Oct 24 19:17:55 2006 UTC (21 months ago) by pankaj
Branch: MAIN
Changes since 1.18: +67 -1 lines
Diff to previous 1.18

added new trait terms from GrainGenes.

Revision 1.18 / (view) - annotate - [select for diffs] , Wed Sep 20 15:35:58 2006 UTC (22 months ago) by pankaj
Branch: MAIN
CVS Tags: PO_0906
Changes since 1.17: +9 -1 lines
Diff to previous 1.17

added one new term percent germination.
added definition and synonym for TO:0000450

Revision 1.17 / (view) - annotate - [select for diffs] , Thu Aug 24 20:31:27 2006 UTC (23 months ago) by pankaj
Branch: MAIN
Changes since 1.16: +7 -1 lines
Diff to previous 1.16

added term for plastochron

Revision 1.16 / (view) - annotate - [select for diffs] , Mon Jul 31 18:47:38 2006 UTC (23 months, 3 weeks ago) by pankaj
Branch: MAIN
Changes since 1.15: +80 -80 lines
Diff to previous 1.15

Some of the terms with IDs starting with TO:012XXX were transformed to TO:0002XXX. It was a mistake as the standard ID lingth is to have 7 digits.

Revision 1.15 / (view) - annotate - [select for diffs] , Mon Jul 17 19:16:19 2006 UTC (2 years ago) by pankaj
Branch: MAIN
Changes since 1.14: +50 -7 lines
Diff to previous 1.14

added a few traits and synonyms

Revision 1.14 / (view) - annotate - [select for diffs] , Mon May 15 18:44:23 2006 UTC (2 years, 2 months ago) by pankaj
Branch: MAIN
CVS Tags: PO_0706, PO_0406
Changes since 1.13: +242 -14 lines
Diff to previous 1.13

added solanaceae terms and synonyms

Revision 1.13 / (view) - annotate - [select for diffs] , Mon Feb 20 19:40:41 2006 UTC (2 years, 5 months ago) by pankaj
Branch: MAIN
CVS Tags: PO_0306
Changes since 1.12: +17 -5 lines
Diff to previous 1.12

added new term: grain length.
modified parentage of several children of grain and seed size.

Revision 1.12 / (view) - annotate - [select for diffs] , Mon Feb 6 21:46:10 2006 UTC (2 years, 5 months ago) by pankaj
Branch: MAIN
CVS Tags: PO_0206
Changes since 1.11: +16 -1 lines
Diff to previous 1.11

added new terms

Revision 1.11 / (view) - annotate - [select for diffs] , Thu Feb 2 20:54:27 2006 UTC (2 years, 5 months ago) by pankaj
Branch: MAIN
Changes since 1.10: +47 -1 lines
Diff to previous 1.10

added new terms

Revision 1.10 / (view) - annotate - [select for diffs] , Mon Jan 30 21:59:41 2006 UTC (2 years, 5 months ago) by pankaj
Branch: MAIN
Changes since 1.9: +99 -4 lines
Diff to previous 1.9

added new terms and synonyms

Revision 1.9 / (view) - annotate - [select for diffs] , Wed Jan 25 21:47:14 2006 UTC (2 years, 5 months ago) by pankaj
Branch: MAIN
Changes since 1.8: +1 -1 lines
Diff to previous 1.8

corrected the spellings

Revision 1.8 / (view) - annotate - [select for diffs] , Wed Jan 25 21:44:03 2006 UTC (2 years, 5 months ago) by pankaj
Branch: MAIN
Changes since 1.7: +17 -1 lines
Diff to previous 1.7

added terms pericarp color and hull color

Revision 1.7 / (view) - annotate - [select for diffs] , Thu Sep 15 14:50:35 2005 UTC (2 years, 10 months ago) by pankaj
Branch: MAIN
Changes since 1.6: +28 -5 lines
Diff to previous 1.6

added new terms and definitions

Revision 1.6 / (view) - annotate - [select for diffs] , Fri Sep 9 15:55:32 2005 UTC (2 years, 10 months ago) by pankaj
Branch: MAIN
Changes since 1.5: +25 -693 lines
Diff to previous 1.5

added synonyms. removed the obsolete flag for TO:0000457

Revision 1.5 / (view) - annotate - [select for diffs] , Wed Aug 24 17:42:38 2005 UTC (2 years, 11 months ago) by pankaj
Branch: MAIN
Changes since 1.4: +1886 -1013 lines
Diff to previous 1.4

added new traits and modified term-term relationships

Revision 1.4 / (view) - annotate - [select for diffs] , Tue Aug 23 20:38:48 2005 UTC (2 years, 11 months ago) by pankaj
Branch: MAIN
Changes since 1.3: +2 -2 lines
Diff to previous 1.3

modified parent for chlorophyll content

Revision 1.3 / (view) - annotate - [select for diffs] , Tue Aug 23 20:05:04 2005 UTC (2 years, 11 months ago) by pankaj
Branch: MAIN
Changes since 1.2: +19 -3 lines
Diff to previous 1.2

added new traits

Revision 1.2 / (view) - annotate - [select for diffs] , Thu Jun 16 20:20:13 2005 UTC (3 years, 1 month ago) by pankaj
Branch: MAIN
Changes since 1.1: +783 -742 lines
Diff to previous 1.1

Added new traits

Revision 1.1 / (view) - annotate - [select for diffs] , Thu Feb 10 16:39:51 2005 UTC (3 years, 5 months ago) by pankaj
Branch: MAIN
CVS Tags: PO_0405

This first version of the trait ontology in OBO format is based on the previous versions of the trait.ontology (ver 1.18) and trait.definition (ver1.17).

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CVS log for Poc/ontology/collaborators_ontology/gramene/traits/trait.obo

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