CVS log for gramene_ensembl/conf/DEFAULTS.ini

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Revision 1.46.4.2 / (view) - annotate - [select for diffs] , Thu Jun 1 12:48:58 2006 UTC (2 years, 7 months ago) by pasternak
Branch: maize_genome_project
Changes since 1.46.4.1: +9 -2 lines
Diff to previous 1.46.4.1 to branch point 1.46 to next main 1.47 
Brought in changes from dev site.
Revision 1.47.2.1 / (view) - annotate - [select for diffs] , Wed May 10 20:53:28 2006 UTC (2 years, 7 months ago) by whs
Branch: build21-branch
Changes since 1.47: +3 -1 lines
Diff to previous 1.47 to next main 1.48 
ported from HEAD
Revision 1.48 / (view) - annotate - [select for diffs] , Wed May 10 20:51:16 2006 UTC (2 years, 7 months ago) by whs
Branch: MAIN
CVS Tags: build23-branchpoint, build23-branch, HEAD
Changes since 1.47: +3 -1 lines
Diff to previous 1.47 
Updated GRAMENE_PATHWAY
Revision 1.47 / (view) - annotate - [select for diffs] , Wed May 3 16:04:33 2006 UTC (2 years, 8 months ago) by whs
Branch: MAIN
CVS Tags: build21-branchpoint
Branch point for: build21-branch
Changes since 1.46: +18 -3 lines
Diff to previous 1.46 
Extra URLs for xref system
Revision 1.46.4.1 / (view) - annotate - [select for diffs] , Wed Apr 19 21:27:48 2006 UTC (2 years, 8 months ago) by pasternak
Branch: maize_genome_project
Changes since 1.46: +5 -5 lines
Diff to previous 1.46 
Configuration changes, added small logo
Revision 1.46 / (view) - annotate - [select for diffs] , Tue Mar 21 13:09:47 2006 UTC (2 years, 9 months ago) by whs
Branch: MAIN
CVS Tags: tmp_maize_merge
Branch point for: maize_genome_project
Changes since 1.45: +2 -2 lines
Diff to previous 1.45 
Default to filetta
Revision 1.45 / (view) - annotate - [select for diffs] , Mon Mar 20 21:49:05 2006 UTC (2 years, 9 months ago) by whs
Branch: MAIN
Changes since 1.44: +1 -1 lines
Diff to previous 1.44 
Changed label for DNAFEATURE_BAC from "Clones (GenBank)" to "BACs (GenBank)"
Revision 1.44.4.1 / (view) - annotate - [select for diffs] , Mon Mar 20 21:46:41 2006 UTC (2 years, 9 months ago) by whs
Branch: build20-branch
Changes since 1.44: +1 -1 lines
Diff to previous 1.44 to next main 1.45 
Changed label for DNAFEATURE_BAC from "Clones (GenBank)" to "BACs (GenBank)"
Revision 1.44 / (view) - annotate - [select for diffs] , Wed Mar 1 17:42:46 2006 UTC (2 years, 10 months ago) by whs
Branch: MAIN
CVS Tags: build20-branchpoint
Branch point for: build20-branch
Changes since 1.43: +2 -0 lines
Diff to previous 1.43 
Added CDNA_FGENESH_GENE and PEP_FGENESH_GENE blast sources
Revision 1.43 / (view) - annotate - [select for diffs] , Mon Feb 6 00:45:51 2006 UTC (2 years, 11 months ago) by steven
Branch: MAIN
Changes since 1.42: +4 -1 lines
Diff to previous 1.42 
panzea link
Revision 1.42 / (view) - annotate - [select for diffs] , Sat Feb 4 08:16:24 2006 UTC (2 years, 11 months ago) by steven
Branch: MAIN
Changes since 1.41: +5 -3 lines
Diff to previous 1.41 
before links to panzea
Revision 1.41.2.1 / (view) - annotate - [select for diffs] , Tue Nov 1 20:19:03 2005 UTC (3 years, 2 months ago) by steven
Branch: build19-branch
CVS Tags: build19_old_navbar
Changes since 1.41: +2 -2 lines
Diff to previous 1.41 to next main 1.42 
on live site
Revision 1.41 / (view) - annotate - [select for diffs] , Thu Oct 6 04:40:38 2005 UTC (3 years, 3 months ago) by steven
Branch: MAIN
CVS Tags: build19-branchpoint
Branch point for: build19-branch
Changes since 1.40: +1 -1 lines
Diff to previous 1.40 
renamed databases for release 19
Revision 1.40 / (view) - annotate - [select for diffs] , Wed Oct 5 20:58:34 2005 UTC (3 years, 3 months ago) by steven
Branch: MAIN
Changes since 1.39: +2 -1 lines
Diff to previous 1.39 
plantgdb link
Revision 1.16.2.15 / (view) - annotate - [select for diffs] , Mon Oct 3 17:39:50 2005 UTC (3 years, 3 months ago) by steven
Branch: branch-ensembl-26
Changes since 1.16.2.14: +1 -1 lines
Diff to previous 1.16.2.14 to branch point 1.16 to next main 1.17 
was in acorn:/usr/local/gramene_ensembl-26/
Revision 1.39 / (view) - annotate - [select for diffs] , Thu Sep 22 20:21:22 2005 UTC (3 years, 3 months ago) by weix
Branch: MAIN
Changes since 1.38: +3 -1 lines
Diff to previous 1.38 
changed search url for Maize_ArrayGene_NSF58K
Revision 1.37.2.1 / (view) - annotate - [select for diffs] , Fri Sep 2 16:05:15 2005 UTC (3 years, 4 months ago) by steven
Branch: build18-branch
CVS Tags: build18-merged-from-trunk
Changes since 1.37: +3 -2 lines
Diff to previous 1.37 to next main 1.38 
merged from trunk
Revision 1.38 / (view) - annotate - [select for diffs] , Fri Sep 2 16:01:25 2005 UTC (3 years, 4 months ago) by steven
Branch: MAIN
CVS Tags: merged-to-build18, made-live
Changes since 1.37: +2 -1 lines
Diff to previous 1.37 
fix EST link to Pratt
Revision 1.37 / (view) - annotate - [select for diffs] , Thu Jul 14 16:11:46 2005 UTC (3 years, 5 months ago) by whs
Branch: MAIN
CVS Tags: build18-branchpoint
Branch point for: build18-branch
Changes since 1.36: +1 -0 lines
Diff to previous 1.36 
Added RICEMPSS ExtURL
Revision 1.36 / (view) - annotate - [select for diffs] , Wed Jul 13 18:55:27 2005 UTC (3 years, 5 months ago) by steven
Branch: MAIN
Changes since 1.35: +5 -1 lines
Diff to previous 1.35 
links for array tracks
Revision 1.35 / (view) - annotate - [select for diffs] , Wed Jul 13 13:53:21 2005 UTC (3 years, 5 months ago) by whs
Branch: MAIN
Changes since 1.34: +1 -1 lines
Diff to previous 1.34 
New protein DBs, and added Poaceae.ini
Revision 1.34 / (view) - annotate - [select for diffs] , Fri Jul 8 15:40:18 2005 UTC (3 years, 6 months ago) by whs
Branch: MAIN
Changes since 1.33: +4 -3 lines
Diff to previous 1.33 
Updated config for gramene v18 release
Revision 1.33.2.1 / (view) - annotate - [select for diffs] , Fri May 6 20:54:04 2005 UTC (3 years, 8 months ago) by steven
Branch: build17a-branch
Changes since 1.33: +2 -2 lines
Diff to previous 1.33 to next main 1.34 
filetta instead of acorn
Revision 1.33 / (view) - annotate - [select for diffs] , Thu May 5 16:59:39 2005 UTC (3 years, 8 months ago) by steven
Branch: MAIN
CVS Tags: build17a-branchpoint
Branch point for: build17a-branch
Changes since 1.32: +2 -0 lines
Diff to previous 1.32 
link wheat consensus to wheatplex at barleybase, not to affy
Revision 1.32 / (view) - annotate - [select for diffs] , Thu May 5 16:14:41 2005 UTC (3 years, 8 months ago) by whs
Branch: MAIN
Changes since 1.31: +4 -2 lines
Diff to previous 1.31 
Fixed type on ENSEMBL_PREDICTION_TEXT_FGENESH and added AFFYMETRIX_FINDER and AFFYMETRIX_SUPPORT exturls
Revision 1.31 / (view) - annotate - [select for diffs] , Wed May 4 14:40:23 2005 UTC (3 years, 8 months ago) by whs
Branch: MAIN
Changes since 1.30: +3 -2 lines
Diff to previous 1.30 
Updated config for v17a release
Revision 1.30 / (view) - annotate - [select for diffs] , Fri Apr 1 09:35:23 2005 UTC (3 years, 9 months ago) by whs
Branch: MAIN
Changes since 1.29: +2 -2 lines
Diff to previous 1.29 
Removed [ENSEMBL_DB] section - take from DEFAULTS
Revision 1.29 / (view) - annotate - [select for diffs] , Wed Mar 30 15:53:09 2005 UTC (3 years, 9 months ago) by whs
Branch: MAIN
Changes since 1.28: +0 -8 lines
Diff to previous 1.28 
Removed ENSEMBL_HELP db connection override
Revision 1.28.2.1 / (view) - annotate - [select for diffs] , Tue Mar 29 20:57:38 2005 UTC (3 years, 9 months ago) by steven
Branch: build17-branch
Changes since 1.28: +1 -1 lines
Diff to previous 1.28 to next main 1.29 
help host
Revision 1.28 / (view) - annotate - [select for diffs] , Mon Mar 21 10:13:47 2005 UTC (3 years, 9 months ago) by whs
Branch: MAIN
CVS Tags: build17-branchpoint
Branch point for: build17-branch
Changes since 1.27: +2 -1 lines
Diff to previous 1.27 
Added PEPFEATURE_UNIPROT BLAST conf
Revision 1.27 / (view) - annotate - [select for diffs] , Thu Mar 17 09:23:33 2005 UTC (3 years, 9 months ago) by whs
Branch: MAIN
Changes since 1.26: +1 -1 lines
Diff to previous 1.26 
use filetta as default db
Revision 1.26 / (view) - annotate - [select for diffs] , Thu Mar 17 09:20:09 2005 UTC (3 years, 9 months ago) by whs
Branch: MAIN
Changes since 1.25: +2 -2 lines
Diff to previous 1.25 
Added PredictionTranscript to the list of feature_classes. Will be in ensembl v29
Revision 1.25 / (view) - annotate - [select for diffs] , Tue Mar 15 18:19:05 2005 UTC (3 years, 9 months ago) by whs
Branch: MAIN
Changes since 1.24: +1 -1 lines
Diff to previous 1.24 
Updated CMap link for v17
Revision 1.24 / (view) - annotate - [select for diffs] , Mon Mar 14 14:27:30 2005 UTC (3 years, 9 months ago) by whs
Branch: MAIN
Changes since 1.23: +53 -55 lines
Diff to previous 1.23 
New blast config for v17
Revision 1.23 / (view) - annotate - [select for diffs] , Fri Mar 4 16:55:12 2005 UTC (3 years, 10 months ago) by whs
Branch: MAIN
Changes since 1.22: +20 -3 lines
Diff to previous 1.22 
Updated for v17 release
Revision 1.22 / (view) - annotate - [select for diffs] , Mon Feb 28 11:30:27 2005 UTC (3 years, 10 months ago) by whs
Branch: MAIN
Changes since 1.21: +4 -1 lines
Diff to previous 1.21 
GO terms now link to Gramene ontology browser rather than GoView
Revision 1.21 / (view) - annotate - [select for diffs] , Thu Feb 24 13:24:37 2005 UTC (3 years, 10 months ago) by whs
Branch: MAIN
Changes since 1.20: +9 -1 lines
Diff to previous 1.20 
Pdomain links
Revision 1.20 / (view) - annotate - [select for diffs] , Tue Feb 22 12:54:20 2005 UTC (3 years, 10 months ago) by whs
Branch: MAIN
Changes since 1.19: +1 -0 lines
Diff to previous 1.19 
Added TIGR_LOCUS ext-url
Revision 1.19 / (view) - annotate - [select for diffs] , Fri Feb 11 09:56:05 2005 UTC (3 years, 10 months ago) by whs
Branch: MAIN
Changes since 1.18: +3 -3 lines
Diff to previous 1.18 
Fixes appear in Ensembl v28
Revision 1.18 / (view) - annotate - [select for diffs] , Thu Feb 10 17:30:28 2005 UTC (3 years, 10 months ago) by steven
Branch: MAIN
CVS Tags: build16-merged
Changes since 1.17: +281 -125 lines
Diff to previous 1.17 
merged branch-ensembl-26
Revision 1.16.2.14 / (view) - annotate - [select for diffs] , Fri Feb 4 22:39:00 2005 UTC (3 years, 11 months ago) by whs
Branch: branch-ensembl-26
CVS Tags: build16-end
Changes since 1.16.2.13: +1 -1 lines
Diff to previous 1.16.2.13 to branch point 1.16 
Changed PRATT_EST exturl link as requested by Marie-Michele Cordonnier-Pratt
Revision 1.16.2.13 / (view) - annotate - [select for diffs] , Tue Jan 25 19:40:03 2005 UTC (3 years, 11 months ago) by steven
Branch: branch-ensembl-26
CVS Tags: live-rel-16
Changes since 1.16.2.12: +1 -1 lines
Diff to previous 1.16.2.12 to branch point 1.16 
live site
Revision 1.16.2.12 / (view) - annotate - [select for diffs] , Thu Jan 13 18:10:40 2005 UTC (3 years, 11 months ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.11: +4 -1 lines
Diff to previous 1.16.2.11 to branch point 1.16 
Reinstated some missing zmenu links
Revision 1.16.2.11 / (view) - annotate - [select for diffs] , Thu Dec 16 12:41:25 2004 UTC (4 years ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.10: +4 -0 lines
Diff to previous 1.16.2.10 to branch point 1.16 
Added some more ext-urls
Revision 1.16.2.10 / (view) - annotate - [select for diffs] , Thu Dec 9 14:41:37 2004 UTC (4 years ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.9: +2 -2 lines
Diff to previous 1.16.2.9 to branch point 1.16 
Added links from SpTrEMBL to Gramene Proteins
Revision 1.16.2.9 / (view) - annotate - [select for diffs] , Thu Dec 9 14:32:22 2004 UTC (4 years ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.8: +1 -1 lines
Diff to previous 1.16.2.8 to branch point 1.16 
Added links from SpTrEMBL to Gramene Proteins
Revision 1.16.2.8 / (view) - annotate - [select for diffs] , Thu Dec 9 14:27:45 2004 UTC (4 years ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.7: +3 -1 lines
Diff to previous 1.16.2.7 to branch point 1.16 
Added links from SpTrEMBL to Gramene Proteins
Revision 1.16.2.7 / (view) - annotate - [select for diffs] , Tue Dec 7 16:36:19 2004 UTC (4 years, 1 month ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.6: +1 -0 lines
Diff to previous 1.16.2.6 to branch point 1.16 
Addition of PRATT_EST exturl
Revision 1.16.2.6 / (view) - annotate - [select for diffs] , Mon Dec 6 15:48:14 2004 UTC (4 years, 1 month ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.5: +4 -4 lines
Diff to previous 1.16.2.5 to branch point 1.16 
Chenged to use versioned binaries, and the ensembl mysqld on acorn
Revision 1.16.2.5 / (view) - annotate - [select for diffs] , Thu Nov 25 13:28:18 2004 UTC (4 years, 1 month ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.4: +2 -0 lines
Diff to previous 1.16.2.4 to branch point 1.16 
Few more ExtURLs
Revision 1.16.2.4 / (view) - annotate - [select for diffs] , Tue Nov 16 17:06:20 2004 UTC (4 years, 1 month ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.3: +3 -1 lines
Diff to previous 1.16.2.3 to branch point 1.16 
New ext-urls and emboss configuration
Revision 1.16.2.3 / (view) - annotate - [select for diffs] , Mon Nov 15 15:40:38 2004 UTC (4 years, 1 month ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.2: +15 -5 lines
Diff to previous 1.16.2.2 to branch point 1.16 
Added more ExtURLs
Revision 1.16.2.2 / (view) - annotate - [select for diffs] , Thu Nov 11 13:57:47 2004 UTC (4 years, 1 month ago) by whs
Branch: branch-ensembl-26
Changes since 1.16.2.1: +20 -0 lines
Diff to previous 1.16.2.1 to branch point 1.16 
Added gramene-specific EXT_URLs
Revision 1.17 / (view) - annotate - [select for diffs] , Thu Nov 4 19:48:46 2004 UTC (4 years, 2 months ago) by steven
Branch: MAIN
CVS Tags: data-rel-15-0, before-merge-26
Changes since 1.16: +12 -12 lines
Diff to previous 1.16 
live release15
Revision 1.16.2.1 / (view) - annotate - [select for diffs] , Wed Nov 3 22:06:03 2004 UTC (4 years, 2 months ago) by whs
Branch: branch-ensembl-26
Changes since 1.16: +236 -124 lines
Diff to previous 1.16 
Config files for Gramene 26-16 mysql development
Revision 1.16 / (view) - annotate - [select for diffs] , Fri Oct 1 20:48:59 2004 UTC (4 years, 3 months ago) by steven
Branch: MAIN
CVS Tags: ensembl-26-branchpoint
Branch point for: branch-ensembl-26
Changes since 1.15: +12 -12 lines
Diff to previous 1.15 
filetta
Revision 1.15 / (view) - annotate - [select for diffs] , Fri Aug 20 19:23:24 2004 UTC (4 years, 4 months ago) by steven
Branch: MAIN
CVS Tags: data-rel-14-0
Changes since 1.14: +6 -7 lines
Diff to previous 1.14 
release 14 live
Revision 1.14 / (view) - annotate - [select for diffs] , Mon Aug 9 18:26:23 2004 UTC (4 years, 4 months ago) by steven
Branch: MAIN
Changes since 1.13: +2 -1 lines
Diff to previous 1.13 
config from chevre for testing raclette databases
Revision 1.13 / (view) - annotate - [select for diffs] , Wed Mar 24 10:34:57 2004 UTC (4 years, 9 months ago) by steven
Branch: MAIN
CVS Tags: data-rel-13-0
Changes since 1.12: +2 -2 lines
Diff to previous 1.12 
live
Revision 1.12 / (view) - annotate - [select for diffs] , Fri Feb 6 07:58:56 2004 UTC (4 years, 11 months ago) by steven
Branch: MAIN
Changes since 1.11: +4 -0 lines
Diff to previous 1.11 
TIGR links
Revision 1.11 / (view) - annotate - [select for diffs] , Tue Jan 27 10:41:38 2004 UTC (4 years, 11 months ago) by steven
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10 
type
Revision 1.10 / (view) - annotate - [select for diffs] , Tue Jan 27 08:10:20 2004 UTC (4 years, 11 months ago) by steven
Branch: MAIN
Changes since 1.9: +2 -1 lines
Diff to previous 1.9 
link to ncbi instead of ebi
Revision 1.9 / (view) - annotate - [select for diffs] , Wed Jan 14 10:00:39 2004 UTC (4 years, 11 months ago) by steven
Branch: MAIN
Changes since 1.8: +3 -3 lines
Diff to previous 1.8 
mod chevre conf for raclette, fix search menu
Revision 1.8 / (view) - annotate - [select for diffs] , Sun Jan 11 12:48:18 2004 UTC (4 years, 11 months ago) by steven
Branch: MAIN
Changes since 1.7: +1 -1 lines
Diff to previous 1.7 
fix genbank links
Revision 1.7 / (view) - annotate - [select for diffs] , Fri Jan 9 18:51:45 2004 UTC (4 years, 11 months ago) by steven
Branch: MAIN
Changes since 1.6: +3 -3 lines
Diff to previous 1.6 
for release
Revision 1.6 / (view) - annotate - [select for diffs] , Tue Sep 30 21:14:18 2003 UTC (5 years, 3 months ago) by steven
Branch: MAIN
Changes since 1.5: +3 -3 lines
Diff to previous 1.5 
avoid crash for marker mapped off end of contig
Revision 1.5 / (view) - annotate - [select for diffs] , Wed Sep 24 21:17:43 2003 UTC (5 years, 3 months ago) by steven
Branch: MAIN
Changes since 1.4: +8 -8 lines
Diff to previous 1.4 
fix SwissProt links; No PFETCH
Revision 1.4 / (view) - annotate - [select for diffs] , Sat Sep 13 07:18:25 2003 UTC (5 years, 3 months ago) by steven
Branch: MAIN
Changes since 1.3: +5 -5 lines
Diff to previous 1.3 
ok on raclette
Revision 1.3 / (view) - annotate - [select for diffs] , Wed Aug 27 22:41:47 2003 UTC (5 years, 4 months ago) by steven
Branch: MAIN
Changes since 1.2: +24 -9 lines
Diff to previous 1.2 
debug merges, etc
Revision 1.2 / (view) - annotate - [select for diffs] , Mon Aug 25 13:41:25 2003 UTC (5 years, 4 months ago) by steven
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1 
EMBOSS
Revision 1.1.5.1 / (view) - annotate - [select for diffs] , Thu Aug 21 14:19:30 2003 UTC (5 years, 4 months ago) by steven
Branch: STEVETEST
CVS Tags: STEVETEST-20030821
Changes since 1.1: +0 -0 lines
Diff to previous 1.1 to next main 1.2 
stevetest August 21, 2003
Revision 1.1 / (view) - annotate - [select for diffs] , Thu Aug 21 14:19:30 2003 UTC (5 years, 4 months ago) by steven
Branch: MAIN 
Initial revision
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